Provides views for a variety of genomes, complete chromosomes, sequence maps with contigs, and integrated genetic and physical maps. Organized in six major organism groups: Archaea, Bacteria, Eukaryotae, Viruses, Viroids, and Plasmids. Includes complete chromosomes, organelles and plasmids, as well as draft genome assemblies.
A complete computer representation of the cell, the organism, and the biosphere. Enables computational prediction of higher-level complexity of cellular processes and organism behaviors from genomic and molecular information.
Provides several genomic biology tools and resources, including organism-specific pages that include links to many web sites and databases relevant to that species.
Displays information on all of the publicly available, complete prokaryotic genomes.
Displays for sequenced genomes, three different genometric analyses: the DNA walk and the GC and TA skews during the initial phase. Primarily focused on prokaryotic chromosomes, but includes genometric information on paradigm plasmids, phages, viruses, and organelles.
Archives and distributes results of studies of the interaction of genotype and phentoype, e.g. genome-wide association studies, medical sequencing, and molecular diagnostic assays, as well as the association betwen genotype and non-clinical traits.
Provides special browsing capabilities for a subset of organisms in Entrez Genome.
A Clade Oriented Database (COD) containing genomic, genetic, phenotypic and taxonomic information for species in the Euasterid clade, including the families Solanaceae (e.g. tomato, potato, eggplant, pepper, petunia) and Rubiaceae (coffee). Genomic information is presented in a comparative format and tied to the fully-sequenced Arabidopsis genome.
Sets of transcript sequences that appear to come from the same transcription locus, together with information on protein similarities, gene expression, cDNA clone reagents and genomic location.
Performs automated, in-depth annotation of bacterial genomic (chromosomal and plasmid) sequences.
The Ensembl project produces and makes available genome databases for vertebrates and other eukaryotic species.
Provides sequence similarity searching against complete genomes databases using the FASTA (FAST-ALL) programs.
Provides functional annotation of genes by BLAST comparisons against the manually curated KEGG GENES database. The result contains KO (KEGG Orthology) assignments and automatically generated KEGG pathways.
Contains the reference sequence and working draft assemblies for a large collection of genomes, and provides a portal to the ENCODE project.
An interactive visual database containing hundreds of fully labeled, zoomable, and searchable maps of bacterial genomes.
A gateway to publicly accessible CRISPRs database and software. Enables easy detection of CRISPRs in locally-produced data and consultation of CRISPRs present in the database. Includes information on the presence of CRISPR-associated (cas) genes when annotated as such.
A comprehensive gene and protein interactions database designed specifically for the model organism Drosophila.
A comprehensive database of sequenced tagged sites (STSs).
Provides access to 37 genomes, from various stages of the sequencing curation pipeline, from early access to partial genomes with automatic annotation through to complete genomes with extensive manual curation.
A complete virus genome data repository.
Helps identify the genotype of a viral sequence.
A system, based on manual protein annotation, that identifies and semi-automatically annotates proteins that are part of well-conserved families or subfamilies.
A system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes.
An integrated information resource and analysis platform for genetic, genomic, and phylogenetic studies of influenza virus.
A collection of metabolic profiles and phylogenomic information on a taxonomically diverse range of eukaryotes.
Integrated genetic, genomic and biological data on the laboratory mouse to facilitate the syudy of human health and disease.
Presents data obtained from the NIAID Influenza Genome Sequencing Project and GenBank, combined with tools for flu sequence analysis, annotation and submission to GenBank.
A collection of virus genomic sequences.
A window on the biology of more than 50 microbial species from the domain Archaea.
Provides access to scientific experimental data resulting from collaborations and technology development involving the Yeast Resource Center. The data has been made public either through publication or by specific consent of the researchers involved.
The Zebrafish Model Organism Database